Jeff Hammerbacher

New standard for summary statistics https://ebispot.github.io/gwas-blog/new-standard-for-gwas-summary-statistics

FWIW I’m pretty interested in the difference! I’d prefer to keep this open and figure it out, even if it’s not relevant for the benchmarking exercise.

Wes has a lot of thoughts on this topic, e.g. https://discuss.ossdata.org/t/pooling-efforts-on-continuous-benchmarking-cb/206 which led to https://github.com/conbench/conbench.

Dusting off an old Discourse post that contains a nice list of core operations: https://discourse.pystatgen.org/t/core-operations-in-human-gwas-workloads/41. We should probably have a benchmark for each of these core operations.

Conbench from Ursa Labs could be useful for us: https://ursalabs.org/blog/announcing-conbench. cc @arunkk09 and @LiangdeLI

It turns out the right sidebar is not shown on mobile, so the TOC on each page could plausibly stay. I would still recommend we get rid of it, though,...

@LiangdeLI https://github.com/chrchang/plink-ng/blob/master/1.9/plink_calc.c#L6988 appears to be where PCA is implemented in Plink FYI

If we want to stay on GitHub Pages, there seem to be a few options: - https://github.com/sphinx-contrib/sphinxcontrib-versioning (abandoned) - https://github.com/Holzhaus/sphinx-multiversion - https://github.com/buildthedocs/btd Otherwise it may be time to look into...

@tomwhite ah yes I do recall that now! I think there are at least 3 tasks here moving forward: - [ ] Make the most recent release the default docs...

It looks like a version switcher is coming to the PyData Sphinx theme, from which our theme inherits: https://github.com/pydata/pydata-sphinx-theme/issues/23.