Hamid Ghaedi

Working on TCGA data , I am getting the same error: ``` Error in `.rowNamesDF traceback() 5: stop("undefined columns selected") 4: `[.data.frame`(df, neworder2) 3: df[neworder2] 2: M3Creal(as.matrix(mydata), maxK = maxK,...

Cool. I will try this solution. If you mind, please post your solution on StackOverflow entry also: https://stackoverflow.com/questions/65010759/clustering-by-m3c-package-error-in-data-framedf-neworder2-undefined-c

Oops, I inadvertently deleted my previous comment, and I assume that @saketkc replied to that comment. For those who drop by, I used Seurat v4 and ran an analysis in...

@EamonCoughlan thank you so much for your comment! It worked for me .