halabikeren

Memory error when using phyml with a custom model

3

Hi, I get a memory error upon executing [phyml ](https://anaconda.org/bioconda/phyml)on the attached alignment with the attached custom aa matrix. *** Error in `phyml': free(): invalid next size (fast): 0x0000556389604930 ***...

Using different optimization method using optim.pml

1

Dear Klaus, Is there an option to control which optimization method is used by `optim` via `optim.pml `? If not, would you suggest calling `optim` directly? Many thanks! Keren

Hello, I was wondering if you could point out the issues in my settings of psem in the following scenarios: 1. when using phylom models 2. when using glmmTMB with...

Hi, I am trying to install the package in a linux environment using: options(repos = c( phyr = 'https://daijiang.r-universe.dev', CRAN = 'https://cloud.r-project.org')) install.packages('phyr') And I get an error: * installing...