napari-simpleitk-image-processing
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haesleinhuepf
Process images using SimpleITK in napari
This PR adds an option to perform fill holes processing slice-wise.
When using `seeded_watershed_labeling`, there are artefacts at the label borders (in this example visible in blue): Best, Mara
Notebook runs on Intel Macs and GPU on HPC. The following should reproduce the issue: - Install devbio-napari into a new conda environment on an M1 Mac. - run a...
importing `napari_simpleitk_image_processing` fails with errors about missing GL libraries (see below). I assume this means that this plugin needs a working display? is there a workaround to make this plugin...
I'm getting crashes when running label statistics for datasets around size `(1000, 2048, 2048)` pixels. There's some sort of memory leak, which kills ipython completely. I'd understand more if this...
See: https://forum.image.sc/t/z-scale-reshape-issue/67022/6 It should be feasible to adopt the assistants strategy to copy layer scale from input to output...
It would be cool to implement some simple transforms: rescaling, translation, rotation and/or rigid. This notebook is a good starting point: http://insightsoftwareconsortium.github.io/SimpleITK-Notebooks/Python_html/21_Transforms_and_Resampling.html
First of all, thank you for making this a useful tool. I have some questions about the function `bilateral_filter()`. I used this function through Python but I only could set...
