BioImageAnalysisNotebooks

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This message was generated by [git-bob](https://github.com/haesleinhuepf/git-bob) (version: 0.2.3, model: gpt-4o-2024-05-13), an experimental AI-based assistant. It can make mistakes and has [limitations](https://github.com/haesleinhuepf/git-bob?tab=readme-ov-file#limitations). Check its messages carefully. Added a new notebook titled...

github-actions[bot]

Code decompilation

2

It would be nice to demonstrate code decompilation with a function decorator. Therefore, we should add a new notebook to the advanced python folder and also to the _toc.yml In...

haesleinhuepf

This message was generated by [git-bob](https://github.com/haesleinhuepf/git-bob) (version: 0.2.3, model: gpt-4o-2024-05-13), an experimental AI-based assistant. It can make mistakes and has [limitations](https://github.com/haesleinhuepf/git-bob?tab=readme-ov-file#limitations). Check its messages carefully. A new Jupyter notebook titled...

github-actions[bot]

Hi @haesleinhuepf, As discussed here the normalization notebook. Therefore, this PR contains: - added `stackview` as installation requirement in readme file of subsection image_analysis_basics - normalization notebook If you feel...

marabuuu

This message was generated by [git-bob](https://github.com/haesleinhuepf/git-bob) (version: 0.2.3, model: gpt-4o-2024-05-13), an experimental AI-based assistant. It can make mistakes and has [limitations](https://github.com/haesleinhuepf/git-bob?tab=readme-ov-file#limitations). Check its messages carefully. Added an ARFPy lesson notebook...

github-actions[bot]

In the secion about machine leaning basics (see TOC), add a noteboook that demonstrates arfpy. Make sure it's installed at the beginning of the notebook. git-bob implement this

haesleinhuepf

maximum_distance parameter is not passed to cle.proximal_other_labels_count_map() in the code block below ----------------------------------------- maximum_distance = 15 # pixels # draw a parametric map of cell counts count_map = cle.proximal_other_labels_count_map(nuclei_cy3, nuclei_egfp)...

wbrett87