Mahendra Gaur

NCBI Data Download Error

1

```javascript E-fetching 6055 genbank records from BioProject PRJNA313047 and writing to. This may take a while. Parsing genbank records. 'NG_074760.1' Processing record 1 of 6055 (accession NG_074760.1) 'NG_074759.1' ..... Processing...

``` bash blab@blab:~/Desktop/Dehulajhari_HotSpring/qiime_analysis_F$ differential_abundance.py -i ucrss_iter/otu_table_mc2_w_tax.biom -o other_analysis/diff_otus.txt -m mapping.csv -a DESeq2_nbinom -c EC -x 0.019 -y 0.025 -d Traceback (most recent call last): File "/usr/local/bin/differential_abundance.py", line 5, in pkg_resources.run_script('qiime==1.9.1-dev',...

Error in loading classifier_all.rds data

1

> library(paprbag) > library(ranger) > # define your path to the previously saved forest > Path2Forest # define independent prediction data > Path2ReadFiles # define output > OutputFilename saveLocation Predictions_paprbag

VCFv4.2 is not a supported version

3

``` javascript $ java -jar VariantToolChest-0.9-SNAPSHOT-jar-with-dependencies.jar VarStats -i /home/blab/Desktop/matK/samtool_result/matK.raw.vcf -s T 2015-07-02 18:50:25 INFO VarStatsEngine:91 - Namespace(SUMMARY=T, association=false, VCF=[/home/blab/Desktop/matK/samtool_result/matK.raw.vcf], OUTPUT=null, pheno=null, DETAILED=null) 2015-07-02 18:50:25 INFO AbstractVariantPool:134 - Opening /home/blab/Desktop/matK/samtool_result/matK.raw.vcf for...