Markus D. Herrmann

Support Motic-generated Aperio slides

11

## Context **Issue type**: (Potential) bug report **Operating system** : Ubuntu 16.04 **Platform**: 64-bit x86 **OpenSlide version**: 3.4.0 **Slide format**: SVS (Motic scanner) ## Details Openslide can only read the...

uwsgi_response_write_body_do() erros

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Sometimes I get the following errors: ``` uwsgi_response_write_body_do(): Broken pipe [core/writer.c line 419] during GET /output (127.0.0.1) ``` or ``` uwsgi_websockets_recv_pkt(): Connection reset by peer [core/websockets.c line 194] during GET...

Allow segmentations to reference multiple images

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Applying the logic of #193 to Segmentation instances.

Add support for instance segmentation with LABELED segmentation type

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This PR introduces changes to support storing multiple connected components for the same segment (labeled mask) in a DICOM Segmentation instance. This is currently not supported by the DICOM standard,...

Allow reference of optical path for annotations measurements

1

In case of intensity measurements for annotations, the microscopy image (and the optical path) need to be specified for the measurements. This PR adds allows including a reference to the...

This PR introduces changes to unify exceptions between `DICOMwebClient` and `DICOMfileClient`. Specifically, it ensures that errors that would result in `requests.HTTPError` exceptions in `DICOMwebClient` are handled the same way by...

This PR implements utilities to create authorized `requests.Session` objects using OpenID Connect (OIDC). It introduces two public classes that are both derived from `requests.Session`: - `ConfidentialClientSession` for confidential clients using...

Implementation of DICOMs3Client based on DICOMwebProtocol

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@pieper @chafey As discussed in #56, it would be great to implement a `DICOMs3Client` based on [DICOMwebProtocol](https://github.com/MGHComputationalPathology/dicomweb-client/blob/a1d4f020b1f2ac32822aad87a4f6f2bfecf95670/src/dicomweb_client/protocol.py#L18). In general, I think we should consider the following aspects for the design...

It would be helpful to add a [TileDebug](https://openlayers.org/en/latest/apidoc/module-ol_source_TileDebug-TileDebug.html) source to the map to enable debugging (e.g., to debug tile shifts https://github.com/MGHComputationalPathology/slim/issues/39).