Heberto Mayorquin

[Feature]: Add an object path as a way to uniquely identify an object in the API

8

It would be great to have something that can be used to specify an object within the nwbfile that is both unique and independent of the backend. An abstraction that...

Adding a general term for chasing behavior

3

So right now the ontology has the two following terms: ``` [Term] id: NBO:0020040 name: chase prey def: "Active pursuit of fleeing prey." [] is_a: NBO:0020292 ! capturing behaviour disjoint_from:...

Adding term for perception of color and texture?

2

We have the current terms: ``` [Term] id: NBO:0000464 name: perception of motion behavior namespace: behavior_ontology def: "\"Perception relating to the process of inferring the speed and direction of elements...

Missing terms for sacaddes and fixation

3

We are working with an automated annotation tool for behaviors in neuroscience. Reading the following paper: Platt, M., Glimcher, P. Neural correlates of decision variables in parietal cortex. Nature 400,...

Pre-select channels to load in `CEDRecordingInterface`

2

PR catalystneuro/nwb-conversion-tools#582 introduced the following change: ``` def __init__(self, file_path: FilePathType, smrx_channel_ids: list, verbose: bool = True): changed to -> def __init__(self, file_path: FilePathType, verbose: bool = True): ``` @bendichter...

Refactor `dict_deep_update` function.

1

While working on PR #481 me and @CodyCBakerPhD were discussing about the poor variable name in this very important function. Right now, we have: https://github.com/catalystneuro/nwb-conversion-tools/blob/5e66722723420856de70e80b8e465f3bb20ebfbd/src/nwb_conversion_tools/utils/dict.py#L121-L124 Which go against the design...

Method for extract metada from nwb to make our round trip testing more complete

4

Right now, our ecephys tests with data, the ones in `test_gin_ecephys` mainly compare the traces as written from the recording extractors. https://github.com/catalystneuro/nwb-conversion-tools/blob/a875b40e15ff34d593eb70ac45a188b46b21c216/tests/test_on_data/test_gin_ecephys.py#L197-L220 Whereas the corresponding tests for sorting extractor mainly...

[Bug] `NWBHDF5IO.can_read()` fails for missing version

3

As in the title, the problem is the following, `NWBHDF5IO.can_read()` relies on `get_nwbfile_version` and **critically** it indexes the output: https://github.com/NeurodataWithoutBorders/pynwb/blob/90e60484415d38d3d566dc9fea63b6d99ffdbe43/src/pynwb/__init__.py#L272 However, `get_nwbfile_version` can also return None and then the indexing...

As in the title, related to https://github.com/SpikeInterface/spikeinterface/issues/3049 Looks like this: 

Seed behavior for generate

1

I did not have time to participate in the review of https://github.com/SpikeInterface/spikeinterface/pull/1948. We added the following auxiliary function to generate: https://github.com/SpikeInterface/spikeinterface/blob/3359647eb7a75a4f258590a46b3f665b7aac9d1d/src/spikeinterface/core/generate.py#L16-L24 Which generates a different seed at runtime when no...