Gregg Thomas

icon indicating a website link https://gwct.github.io/

icon company Harvard University icon location Cambridge, MA icon location Bioinformatics Scientist @harvardinformatics. Evolution, Genomics, Phylogenetics. Dog walker.

Results 3 issues of Gregg Thomas

Difference between lmerge and prune?

2 comment

Hello, I wanted to get some clarifications about these two steps in the [Tutorial ](https://github.com/hall-lab/svtools/blob/master/Tutorial.md) that seem to be doing similar things. I notice that issue #12 points out that...

Segmentation fault with trailing newline in data file

Hi, I've noticed that CAFE exits with a segmentation fault during the `load` command when my data file has an extra blank line at the end of the file. MacOS...

Excessive run time?

5 comment

Hi all, I'm running your SV detection software on several ~40X primate genomes. The problem I'm encountering is excessive run times for lumpy (and the rest of the software associated...