guodudou
guodudou
I am wondering whether bam with marked duplicates is sufficient or I have to export deduplicated reads to a separate bam? Thanks!
Thank you very much for the quick response! In addition, there is a closed issue where people suggested using coverage normalization. I find score slightly changes. But this classifies samples...
Thank you very much for the great information! Do you suggest coverage normalize for normal and tumor samples? Thanks!
Thank you very much! Can you please specify how you implement coverage normalization and/or how normalization affects the the length distribution / msi calling? This is very important to me...
Thank you very much, this is very clear! I plan to extract the coverages of tumor and normal samples at all possible MS loci that are qualified for MSI calling,...
Hello, I have encountered similar ERROR. Have you had the problem fixed? Thanks, Wendy
@KasitC I got exactly the same error. Have you had this problem fixed? Thanks, Wendy