Valentin Guignon

I need time to process those changes. However, regarding your comment 2. ("names are not conserved"), I can say that I also noticed the same problem in the genomes I...

Sounds good. I'll see that next week then. :) [UPDATE]: ...well, the week after I guess.

I agree with you: accessibility, even if it requires more work, should be taken into account.

+1. I do a lot of copy/paste and generate a huge lot of duplicate defs. My document takes a lot of time to load! :-S Would be nice to optimize...

**Note**: to keep the same behavior as before (ie. all outputs in the same directory as the input fasta), just change the command line: - from old cmd: `python shoot...

Since @sebastian-raubach raised the subject today on Slack, it made me think about it again. I'm fine with "externalizing" the authentication process (I do it in my implementation). But the...

:) Yup, I love to reinvent the wheel! :0) No worries, I've already implemented applications using oauth (and even an ancestor) and I definitely know how it works! Thanks. :D...

For your information, I will be investigating a SPARQL Drupal module: [SparQL Entity Storage](https://www.drupal.org/project/sparql_entity_storage). I'm planing to include that module in a Drupal distribution project later in the year so...

The problem with Exception is that you may end up with a WPOTD (white page of the death). The problem with error logging is that some error may exist without...

I don't know if it could interest you but I also had to be able to run Shoot on multiple genes and I made a multi-gene version. See PR https://github.com/davidemms/SHOOT/pull/7