poppr

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If a user reads in a genalex file with semicolons instead of commas, they will get the following error: ```r Error in if (nrow(gena) != ninds) { : missing value...

zkamvar

PAIRWISE FST Calculation

1

>Hello, is there a way to calculate pairwise Fst with poppr v. 2.9.2? I read the instructions in https://github.com/grunwaldlab/poppr/issues/24 but I was not able to understand how to do it....

vcastroagudin

threads not being respected and defaulting to 1

1

- [x] I have the most recent version of poppr and R - [x] I have found a bug - [x] I have searched for solutions on this site and...

pdimens

Optional disabling of statistics in poppr table

6

Please place an "x" in all the boxes that apply --------------------------------------------- - [x] I have the most recent version of poppr and R - [ ] I have found a...

Neato-Nick

Cannot re-level strata of a snpclone object

1

Please place an "x" in all the boxes that apply --------------------------------------------- - [x] I have the most recent version of poppr and R - [x] I have found a bug...

Neato-Nick

Fix inefficient implementation of boot.bruvo

3

Please place an "x" in all the boxes that apply --------------------------------------------- - [x] I have the most recent version of poppr and R - [ ] I have found a...

StaffanBetner

Error with custom distance in aboot with PA data

2

``` r library(poppr) #> Loading required package: adegenet #> Loading required package: ade4 #> Registered S3 method overwritten by 'spdep': #> method from #> plot.mst ape #> #> /// adegenet...

zkamvar

rarefaction in private_alleles function

2

- [x] I have the most recent version of poppr and R - [ ] I have found a bug - [x] I have searched for solutions on this site...

afontcub

Simpson index

3

Please place an "x" in all the boxes that apply --------------------------------------------- - [ ] I have the most recent version of poppr and R - [ ] I have found...

grunwald

Size legend in plot_poppr_msn does not scale well with large nodes

10

Please place an "x" in all the boxes that apply --------------------------------------------- - [x] I have the most recent version of poppr and R - [x] I have found a bug...

Neato-Nick