metacoder

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italicize node labels?

2

Hello! I'm curious if there is a way to italicize node labels. Since node labels are often taxonomic levels, I think this functionality could be helpful.

taylorreiter

Exclude labels of lowest taxon_rank

1

Hello and thanks for the great package. I am producing a heat tree matrix of differential relative abundances in fungal taxa. I would like to display differences in taxa down...

fionnualabulman

Dear Zachary Foster and everyone, I am having trouble on coloring the branches of one tree based on detection of taxa by different gene regions 12S and 16S (and also...

Meng-OY

Running into error when plotting alpha diversity indexes

2

Here is the error ``` > ps_obj #Data quality control > library(metacoder) > obj$data$otu_counts > print(obj) 1186 taxa: aab. Bacteria, aac. Bacteroidota ... cjf. uncultured_delta, cjl. uncultured_Dokdonella 1186 edges: NA->aab,...

ChathuZ

Hello, After benchmark testing of different DA methods for my dataset, I discovered that DESeq2 with poscounts and ANCOM-BC2 are the most performant tests for DA analysis. Thus, I was...

scilexenko