deML

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error when compiling on ubuntu 22.04

7

Hi Gerard, I was hoping to use deML to recover reads from the undetermined*.fastq.gz, after running bcl2fastq2. On Ubuntu 22.04 (with git 2.34.1 & cmake 3.22.1), I get the following,...

schimar

avoid prefix in output

3

Hi, is it possible to avoid the additional prefix when demultiplexing fastq files? I would like the output files to have as prefix the name assigned in the index file....

rcosentino

Compilation error

13

While running make I get the following error: g++ -Wall -lm -O3 -I. -Igzstream/ -I/home/users/xxx/deML-master/bamtools/build/src/api/include/ -I/home/users/xxx/deML-master/bamtools/build/src/include/ -c ReconsReferenceBAM.cpp -o ReconsReferenceBAM.o In file included from ReconsReferenceBAM.cpp:8:0: ReconsReferenceBAM.h:14:10: fatal error: api/BamMultiReader.h: No...

ufyksb

Error on test data

19

On Mac, seems to have compiled correctly. But get error on the test data, I don't think it is permissions issue. ``` src/deML -i testData/index.txt -f testData/todemultiplex.fq1.gz -r testData/todemultiplex.fq2.gz -if1...

nextgenusfs

Error when using "--error" option

1

Hey @grenaud , I am getting this error wheneven I use the "--error" option: `utils.h getCWD failed on d` Not sure if I need this error file but just wanted...

ahwanpandey

Index with N

3

Would be possible to accept index with aNy base? Thanks!

apastore

Multithreading Implemented

2

Gaurav2543

ERROR: Discrepancy between fastq files at record with first index

1

I'm getting this error: ERROR: Discrepancy between fastq files at record with first index @LH00269:168:22F35GLT4:6:1101:43250:1014:CNTAGATA+CNGGCTCT/1 I have dual index illumina paired end files that I want to demultiplex after they...

NACasillas