grandrea comments

Repositories
Issues
Comments

Results 2 comments of


                                            grandrea

Increase the number of threads for jackhmmer

you can change the number of threads used by jackhmmer by increasing the number of cores here https://github.com/deepmind/alphafold/blob/c42a96f3a5b6179484b5f0b936e3dd0c9b08fde1/alphafold/data/tools/jackhmmer.py#L38 . It is 8 by default, you can increase this number. Disclaimer:...

hhalignment: did not find [x] match states in sequence [i]

@jkosinski could you share how to edit the AlphaFold hh-suite call here to prevent this error?