Gabriel Pratt
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Gabriel Pratt
Why not take a biopython SeqIO approach (http://biopython.org/wiki/SeqIO) Where the constructor for the bedtool has an optional file_type arg, and you just inherit down through modifications? Something like: pybedtools.Bedtool(fn, file_type="bed")...
Hmm... I was about to agree with you chasing down all the places were you'll need to manually define changes in type is going to be a huge pain. I...