golansapir

Hey did you get a response/ figured it out? I'm also having trouble understanding the input that should be prepared for this.

Hey, thank you for your replay! I installed everything from the beginning and tried the test.sh again. sapir@wslinux57549:~/Mirorr-master/test$ ./test.sh terminate called after throwing an instance of 'boost::wrapexcept' what(): **unrecognised option...

Hey, It ran after I removed -b from both commands. I am trying to align brain PET scans to the MNI template, as I received a recommendation from Pierrick Bourgeat....

Hey, yes the MNI is MR. I used the same parameters for my analysis as in the test code: **time** "/home/sapir/Mirorr-master/build/bin/mirorr" **-m** "/home/sapir/Mirorr-master/test/"$field2"_rst1PET-1-3.nii.gz" **-****f** "/home/sapir/Mirorr-master/test/MNI152_T1_1mm_brain.nii.gz" **-c 3 -t rigid -l**...

Thank you I'll take a look at these options today and will update

Hey, I was unable to find the full list of parameters you can use. mirorr --help did not execute. Can you please assist?

Hey, I've added the mirror master folder to my path as you suggested. sapir@wslinux57549:~$ echo $PATH /home/sapir/bin:/home/sapir/Mirorr-master still, sapir@wslinux57549:~$ mirorr --help mirorr: command not found sapir@wslinux57549:~$ Mirorr --help Mirorr: command...