DRKG

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Gene with no id inside the file "drkg.tsv"

1

Thanks for all your effort. Great content! Inside the file `drkg.tsv` lines 4123208-4123214 contain genes without id info. You might want to delete them or fix them. You can find...

canbax

Clean download_and_extract() function

1

Get rid of unused variable `fn` Use `with` statement instead of `try`/`finally` to open tarball

ishaan-mehta

Windows support

3

Hi, when I try to run `dglke_train` on my Windows 10 I get the following error: ``` Traceback (most recent call last): File "C:\Users\u1123073\Anaconda3\lib\runpy.py", line 197, in _run_module_as_main return _run_code(code,...

andreasala98

If i am not wrong, DRKG includes ~10K small molecule drugs from DrugBank 4.0. I find that DrugBank 5.1.9 is now available which has more than 11K small molecule drugs....

kamrul-loria

Can't find the Covid-19 Disease Node

2

Hi! Thank you for your work and putting out this tremendous graph! I just have one question concerning the Covid-19 node. All I could find was 27 different SARS-CoV-2 nodes....

fratajcz

The [GNBR paper](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6061699/) states that GNBR contains over 2 million edges, whereas the README for DRKG specifies that only 335,369 edges were derived from GNBR. Where does this discrepancy come...

ishaan-mehta

How to generate my own Knowledge Graph?

2

I am trying to reproduce the results and will like to understand a few things: 1. How are the relationships (links) between entities established within the DRKG dataset (to then...

Sachit1137

Need entity names for the ids in the DRKG graph

1

Hi The graph available in the DRKG repository containing 5,874,261 triplets has ids for identifying compounds and diseases. Please find this sample from the main graph dataset. Sample from graph:...

kapeed1011

Interests about repurposing tasks

1

Hi Dear Author, Your repurposing KG looks great and comprehensive. I'm curious about the use of this KG, especially on repurposing tasks. If my understanding is correct, the "Compound" entities...

zhaohan-xi

how to use it

3

can you show some examples by using this model to predict some drugs on certain diseases？what's the input？ thanks a lot

sailseem