DRKG

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Failed to run for the dataset DRKG

7

Hi, Thanks for all the work. It looks amazing and I am looking forward to integrating my data with other diseases. It's a pity that I cannot run the code...

chiajungchang

ModuleNotFoundError: No module named 'utils'

3

Hi - When I try running this notebook, the 'utils' module is not found. (I have the CWD set to the directory where I downloaded the DRKG) Where should this...

jdauvill

Thanks for sharing the great knowledge, but I got some problem

1

when I try to run the train_embeddings.ipynb code. the command not found. And here are my code print(os.system("DGLBACKEND=pytorch dglke_train --dataset DRKG --data_path ./train --data_files drkg_train.tsv drkg_valid.tsv drkg_test.tsv --format 'raw_udd_hrt' --model_name...

OGWang126

How to use the entity2src.tsv to query the corresponding concepts

1

Hi, thank for sharing this great task. But I want to ask how can I use entity2src to get the corresponding concepts. For example : Gene::100129669 [Hetionet] Biomedical knowledge graph...

freshnemo

Reference to himmelstein's hetionet?

1

This looks very similar to what has already been done by https://github.com/hetio/hetionet. Would you please add documentation explaining how this is different? Did you try using hetionet for this task,...

cthoyt

The DRKG is a great work no doubt in that. I just wanted to understand that how the entites.csv and relationships are generated from? I understood that they are taken...

aspoorna24

Hi I am currently trying to replicate your methods using the notebooks that you have provided. I tried running the Jaccard similarity score notebook and I stumbled upon the following...

rdrivera5

Hello, I would like to ask a question. The results (entity embedding and relational embedding) we trained with the same parameter settings in the code are very different from the...

ChenShengbo00

how to get the entity’s name，can you give the script to get them

Nokeli

Hi! And first of all, thanks a lot for putting this together 👍🏻 I'm working on some drug repurposing tasks, and I've bumped into several compound registers that I can't...

dlopezyse