gmarcais

Hi, I don't have a lot of experience installing on Mac OS. That said, brew in general though should not interfere with the basic functionality of your system. Installing a...

Hi, can you clarify your statement about the precompiled version and SWIG integration? Is it that the precompiled version does NOT have the SWIG bindings? Or that it does have...

Did you download the latest [release tarball](https://github.com/gmarcais/Jellyfish/releases/download/v2.2.6/jellyfish-2.2.6.tar.gz)? It does contain the `configure` script. If you start from the github tree, then you need to generate the configure script, and that...

The ReadMerFile class is meant to read the binary output of the Jellyfish program (the output of 'jellyfish count'). It does not parse fasta files.

There is not a direct equivalent of the count function at this point, one that would take some input files and parse them in a multi-threaded fashion. It could be...

What version of the gcc compiler are you using? nullptr was added in 4.6. You can replace nullptr by NULL in the file swig/string_mer.i and recompile. I presume it should...

Can you try with the following configure flags: --with-sse=no --with-int128=no. The code to run the matrix multiplication without x86_64 assembly (SSE really) is there. If x86_64 was the primary target,...

OK, you got an error, but it looks like a small little things in testing code. Can you try this patch: ``` C++ diff --git a/unit_tests/test_mer_dna.cc b/unit_tests/test_mer_dna.cc index a6f27b8..9415219 100644...

Hi Rob, do you have multiple threads accessing the the `hash_counter`? Do all of them call the `done()` method?

That is weird. One `done()` has return, there should not be any waiting or locking done. The destructor only frees the memory (most likely an `munmap`). Can you gdb into...