Segmentation fault (core dumped)

[mamora]

Hello, Running the following code jellyfish count -m 4 -s 10000000 -t 10 A1_S5_R1_001.fastq.gz.fasta

gives me the following error:

Segmentation fault (core dumped)

What does it mean?

[linsalrob]

In case you didn't fix this, or in case someone else finds this, there is a bug in the latest version (2.2.10) of jellyfish that immediately seg faults on a large file.

The current solution appears to be to use one of the earlier versions of jellyfish if you see this happening to you.

[rafaeldelucena]

@mamora which version are you using?

Can you generate a core dump so I can debug to you?

[Iven-gif]

@mamora Hi, I have the same problem as you do. Did you solve it?

[mamora]

yes, I used another version as linsalrob suggested.