Guillaume Gay

Results 18 issues of Guillaume Gay

Hi and thanks for your code. The widget hangs when I try to upload a big file (126 Mb) - even with a local notebook server. How can this be...

bug

As discussed in the feb. 2021 ngff [community call](https://forum.image.sc/t/next-call-on-next-gen-bioimaging-data-tools-feb-23/48386), and following this [image.sc thread](https://forum.image.sc/t/mesh-data-in-ome-zarr/) The idea is to follow PLY specification to store meshes in ome-zarr. A ply file is...

Hi, It seems the latest documentation (although I am not clear if ISA version 1.0 or 2.0 should be used) is here: https://isa-tools.org/isa-api/content/index.html Search engines mostly return this page: https://isa-specs.readthedocs.io/en/latest/...

We stumble had an error on a large jpeg image (6 624 x 40 653 px, 214 MB) when calling `showinf` (through `omero transfer prepare`) Here is the trace: ```...

TODO: - [ ] fix pandas `FutureWarning` with the dataframes `append` method - [ ] seams that libmpfr and libgmp are missing with python 10? - [ ] tests are...

I think there's a problem with those lines: https://github.com/DamCB/tyssue/blob/e248cea71e2fc604ca7c5b826e192b351a2edff7/tyssue/core/history.py#L287-L292 Looks like the code was not completed ## TODO: * write a test * finish implementation

Here is an email from Chi Xu, who works with @gcourcou >This is Chi, I am working with George Courcoubetis on tissue research. Currently we want to visualize T1 transitions...

As for "color", "visible" in the `draw_specs` dictionary should accept arrays or callables as argument, and be updated dynamically.

HDF5 has issues - it is not very parallel friendly, there is only one implementation of the interface Also, we don't store the metadata very nicely now (in a json...

question
design

A question by mail (thanks Ali!) motivated me to address this in some details. The question basically is how to avoid self intersections like this one: ![self crossing edge](https://github.com/DamCB/tyssue/raw/master/doc/illus/self-crossing.svg) Notice...