Geoff Ivison

No `quiet` arg for `build_site`

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I'm working on debugging an issue running `build_site` where a function is hanging but doesn't error. I was able to narrow it down to one of my pages and made...

I realized today that the scales for all the scatterplots are different when looking at the "plot all barcode biaxials" view, which makes it challenging to assess the strength of...

Can't run template notebooks "ModuleNotFoundError: No module named 'torch.utils._import_utils'"

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Hi Angelo folks! Trying to get started running the analysis notebooks. Followed the install directions in the readme, tried cloning & using conda and installing from pip and getting the...

Surface more customization options for bulk expression heatmaps in pixie

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**Is your feature request related to a problem? Please describe.** Creating the first heatmap in the section titled "Weighted cell SOM cluster average heatmap over channels (z-scored)" (I think the...

Thanks for creating such a useful tool! I'm trying to create a spatial plot colored by cell types, with a custom order for the cell types. Usually I'd achieve this...