Giulia Bertò

--random_colors not distinguishable

4

When I visualize multiple tracts in .trk format with the flag --random_colors, it is hard to distinguish overlapping tracts since they have similar colors (in the case of 4 tracts,...

--do-reconall doesn't seem to work in v 0.15.x

3

The option `--do-reconall` doesn't seem to work in docker pennbbl/qsiprep:0.15.1 and pennbbl/qsiprep:0.15.3. I get the following error: ``` Falling back to 'CITATION' Cannot run qsiprep. Missing dependencies: mri_label2vol (Interface: Label2Vol)...

no figures included in HTML report

12

No figures are included in the HTML report after the preprocessing step. The folder `/sub-/figures` is in fact empty. This happens with versions 0.14.2, 0.14.3, 0.15.3, but not with version...

KeyError: 'DwellTime'

7

With the dockerized version v4.1.3-1 I get the following error: ``` File "/run.py", line 275, in t1_spacing = layout.get_metadata(t1ws[0])["DwellTime"] KeyError: 'DwellTime' ``` Any advice? Thanks!

Explain how to run in a non-interactive way

2

Hi! Is it possible to run HALFpipe non-interactively?