Giovanni Palla
Giovanni Palla
related to #64 and https://github.com/kevinyamauchi/ome-ngff-tables-prototype , as discussed this morning with @kevinyamauchi this is a description of adata slots and how they are used in https://github.com/theislab/squidpy and other spatial analysis...
pinging interested parties @lmweber @drighelli @HelenaLC @ivirshup Nice to meet you all! I believe with some we crossed paths in some zoom dungeons or email thread. I'd like to use...
Hi, I've tried to use zellkonverter to write a sce to disk as anndata. This is the log and error (at the end). Any pointers on how to solve it?...
I think it makes sense to deprecate and then remove `sc.read_visium`. and `sc.pl.spatial` since I don't plan to maintain it here anymore and updated versions are present in Squidpy. What...
## Description Cellular neughborhood analysis: - obs = neighbor - count cell types per nighbor - if knn or delaunay then normalize - if radius than it's density and don't...
**IMPORTANT: Please search among the [Pull requests](../pulls) before creating one.** ## Description Fix :func:`squidpy.read.visium` with spacerangerV2.0 update. ## How has this been tested? ## Closes
**IMPORTANT: Please search among the [Pull requests](../pulls) before creating one.** ## Description ## How has this been tested? ## Closes
disclaimer: I'm not sure it's a bug. I was trying out the `plot-scatter.py` and couldn't figure out how to use it in two different settings - How can I run...
hi, thanks for the really great package. I was wondering if there is any plan to also provide methods for **parsing** array-like data following the pre-defined schemas. In particular, similar...
**Describe the bug** A warning on assumption on index aligned is triggered every time `zonal_stats` is called with a dask array (returning a dask dataframe). This is triggered by (...