Giovanni Palla
Giovanni Palla
mmh interesting, this is really weird, what do you use to do the plotting that looks like a straight line?
ok, try with shape=None in `spatial_scatter` and also can you please print the shape of `adata.obsm["spatial"]`
nice, so can you now try to add a dimension to the image before assigning it to adata.uns, e.g. ```python import numpy as np image = ... # read image...
hi @tcollins2011 is this stil an issue? will close due to inactivity but feel free to reopen
+1 for this, encountered very similar situation regarding omero metadata recently https://github.com/ome/ome-zarr-py/pull/261#issuecomment-1525658925 directly consulting the spec would answer the question, but discoverability could be improved.
my bad, solved it, was an error on my side sorry
Reopening this because this is still an issue, re run command and still have the print out
hi @ktpolanski ,thank you for the heads up > A hotfix is to copy the images back into the appropriate subdirectory, but that's not a feasible expectation on users. I...
hi @DPLemonade , thank you so much for this contribution, it looks good! could you please add a test for his implementation? for example, it could be a regression test...
hi both, thank you for raising this, indeed it's quite hard to keep track of all the changes that various companies implement on their pipeline's output format. The most up...