Gigon Bae

[FEA] Support BioFormats library through cuCIM

3

**Is your feature request related to a problem? Please describe.** We would like to start thinking about supporting [BioFormats](https://www.openmicroscopy.org/bio-formats/). Bioformats is a pathway to access so many formats that we'll...

[FEA] Support Zarr-based image format (such as NGFF)

2

**Is your feature request related to a problem? Please describe.** We need to look at Next-generation file formats (NGFF) (https://ngff.openmicroscopy.org/latest/) which use [Zarr](https://zarr.readthedocs.io/en/stable/) format for general microscopy images with distributed...

**Is your feature request related to a problem? Please describe.** It would be nice to have a utility function in cuCIM Python module so that OpenCV object can be easily...

[DOC] Add example Jupyter notebooks with new features (stain normalization, batch-load API)

1

## Report needed documentation **Report needed documentation** It would be nice to add Jupyter notebooks that show how to use newly added features. E.g., - [stain normalization](https://github.com/rapidsai/cucim/wiki/release_notes_v22.06.00) (#273) - [batch...

[FEA] Expose an API to get import error message

1

**Is your feature request related to a problem? Please describe.** cuCIM ignores ImportError exception to allow partial imports (either `cucim.skimage` or `cucim.clara` package). When an import error happens, there is...

**Is your feature request related to a problem? Please describe.** It would be nice if cuCIM provides a way to specify log levels in runtime so that users can set...

[FEA] expose resize method for MONAI transform

1

**Is your feature request related to a problem? Please describe.** **resize** with antialiasing is a popular method used in Digital Pathology image processing. It would be nice if the method...

Need to check styles with clang-format in CI/CD > Ah ok. Maybe we can track C++ formatting cleanup as an issue _Originally posted by @jakirkham in https://github.com/rapidsai/cucim/pull/108#discussion_r718916918_

See comments in https://github.com/rapidsai/cucim/issues/64#issuecomment-878503005 . DLPack is updated (v0.6.0) and it has breaking changes (in v0.4.0): https://github.com/dmlc/dlpack/releases Need to update DLPack version along with rmm version.

Loading JPEG-compressed TIFF image loading is done as part of [cuCIM v22.02.00](https://github.com/rapidsai/cucim/wiki/release_notes_v22.02.00#2-supporting-multithreading-and-batch-processing) If `device` parameter of `read_region()` method is `"cuda"`, it loads a relevant portion of the image file (compressed...