Sven Giese

Some clumsy way to get the sequences and a summary df could be: ``` import pandas as pd from colabdesign.af.alphafold.common import residue_constants # processign / model fitting model = ()...

You can monkey patch the file in the error by replacing np.int with np.int32. Numpy API has changed and does not allow np.int anymore. ``` restype_atom37_to_rigid_group = np.zeros([21, 37], dtype=np.int)...

@gahdritz can I ask, have you looked at what the gap trick does to the template and MSA feature retrieval / computation? Are they primarily from the longer sequence or...

For me, the issues gets resolved with openmm==7.7.0 (mamba install openmm==7.7.0 -y)

> Hi! I also wonder about the answer to question 2. I have found in #68 that `--format-mode 5` allows to output the target structures in PDB format. However, `--format-mode...