Gibs

So I have been investigating this and I think I have a hypothesis for why this occurs. In the following line, the script file is checked for any wildcards. This...

Hi, all. Recently I worked on a [small project](https://github.com/gibsramen/gUMAP) looking at this very issue. I used the [cluster](https://www.rdocumentation.org/packages/cluster/versions/2.1.0/topics/daisy) package in R to calculate the Gower distance matrix on mixed-data and...

> At this point, though, it might make sense to go for the "quick-and-dirty" version of this sooner? @fedarko I think this would be best. I can take a stab...

Hi, @jwdebelius This is definitely on our radar - see https://github.com/biocore/empress/issues/365#issuecomment-729897107. Would you prefer your proposed checkbox approach to specifying numerical values for end/midpoints?

I'm not sure I understand how this would work as taxonomy != phylogeny.

Related to what @tanaes mentioned is there literature on what a good threshold would be in this case? We could maybe add an input users could specify but dunno what...

Bumping this is as it came up while making the slide for lab meeting presentation. iTOL allows something similar to what @fedarko & @ElDeveloper mentioned. Basically, you can specify the...

In iTOL you can mouse over the barplot and it displays the node name and value of the corresponding layer. 

Interesting idea. The parts with insets seem like they would be a major pain, though. The normal screenshots could probably be achieved with Selenium or something similar?

I think deleting the contents of the output directory might be too dangerous (who knows what other stuff people could have in there). If we could only overwrite `empress.html` and...