Gert Hulselmans
Gert Hulselmans
Compiling the following function to a python extension module and calling it with the wrong type, will crash the python interpreter instead of just trowing an exception: ```python $ cat...
It would be nice if codon would support Arrow data in the future, besides numpy arrays. `nanoarrow` of the Arrow project should have a relatively easily embeddable implementation: > The...
`values` only supports `bins`, which is can give "weird" results when specifying more bins than there are in the range. It is sometimes convenient to specify the size of the...
It would be nice if there was a CLI tool that would allow renaming chrosome names in bigWig/bigBed files where it would only update the chromosome_tree_block part of the bigWig/bigBed...
TAB completion does not work for packages that use native namespaces (where the parent dir does not have `_init__.py` Originally reported at https://github.com/ipython/ipython/issues/14806 and https://github.com/kylebarron/arro3/issues/290 > TAB completion does not...
`d4tools create` should not count deletion parts of reads (`D` parts of CIGAR string) when calculating coverage. `samtools depth` excludes deletions by default (unless you specify `-J`) when calculating coverage....
d4tools create can create wrong data for the last entry of a chromosome when writing non-compressed data: ```bash # Run d4tools create: # -q 10: Filter reads with mapping quality...
TAB completion does not work for packages that use native namespaces: https://packaging.python.org/en/latest/guides/packaging-namespace-packages/#native-namespace-packages Original bug report: https://github.com/kylebarron/arro3/issues/290 > Currently when installing the 3 arrow3 packages, the structure looks like this: >...
Add option to icommands (iput, irsync, icp) to sync local mtime of original file to iRODS via touch API.
Static[int] can't be used in dict, list or tuple: ```python int_to_static_int = {i: Static[i] for i in range(1, 21)} ``` ```python test.codon:1 (32-33): error: expected 'int', 'bool' or 'str' ```...