Gert Hulselmans
Gert Hulselmans
Speedup calc_scores() by caching outputs of calc_error().
groupby ==> group_by mapping is missing: ```diff diff --git a/polars_upgrade/_plugins/renamed_dataframe_methods.py b/polars_upgrade/_plugins/renamed_dataframe_methods.py index 3a3dfd3..3328a60 100644 --- a/polars_upgrade/_plugins/renamed_dataframe_methods.py +++ b/polars_upgrade/_plugins/renamed_dataframe_methods.py @@ -26,6 +26,7 @@ def rename( RENAMINGS = { + "groupby": ((0,...
List of Rust tools (some of them are already on the webpage): `dua` (https://github.com/Byron/dua-cli): `du` replacement with interactive option. `diskus` (https://github.com/sharkdp/diskus): `du -hs` replacement. `whalespotter` (https://github.com/Canop/whalespotter): Find those big fat...
Faster create_pseudobulks function, by assuming that a lot of consecutive values will have the same value. Also streches of zeros are not stored at all. Based on: https://github.com/aertslab/single_cell_toolkit/blob/c15038ddf1322fd4957396c16bb7782ad2e6629e/fragments_to_bw.py#L263C1-L372C82
Implement `-minMax` option of `bigWigAverageOverBed` in `bigwigaverageoverbed`- (as eg: `-minmax`) ``` $ bigWigAverageOverBed bigWigAverageOverBed v2 - Compute average score of big wig over each bed, which may have introns. usage:...
Building wheels for ppc64le with PyO3/maturin-action@v1 fails to find libc headers. ``` Compiling bio-types v1.0.1 Compiling rayon v1.10.0 The following warnings were emitted during compilation: warning: [email protected]: In file included...
Investigate granges rust crate for allowing GenomicRanges like functionality: https://github.com/vsbuffalo/granges
With the latest version (0.3.2), for different images the following error appears now: `panic: couldn't get username` ```bash $ ./dockerc --image docker://oven/bun --output bun $ ./bun thread 40341 panic: couldn't...
…ve any overlap with donor VCF file. Check if cell data has any variant and check if cell data variants have any overlap with donor VCF file. Examples: - Running...