Gert Hulselmans

icon company @aertslab icon location Bioinformatician in Laboratory of Computational Biology (part of KU Leuven Center for Human Genetics and the VIB Center for Brain and Disease Research.).

Results 446 comments of Gert Hulselmans

Running pycisTopic on large datasets?

This pull request might help with your memory problems: https://github.com/aertslab/pycisTopic/pull/77

Running pycisTopic on large datasets?

Pull request #77 is merged in master now.

Bug report [BUG] AttributeError: module 'numpy' has no attribute 'int' group_pr.to_bigwig

Installing a less recent version of numpy, might work.

UTF8 encoding messy code

Maybe your terminal is interpreting the printed bytes as UTF-16 instead of UTF-8. ```python In [12]: "测试中文".encode("utf-8") Out[12]: b'\xe6\xb5\x8b\xe8\xaf\x95\xe4\xb8\xad\xe6\x96\x87' ```

Error while running TILPRED

https://github.com/aertslab/AUCell/issues/28

At risk of removal from Bioconductor

@lshep Can you try this, to see if it solves it? https://github.com/aertslab/AUCell/pull/44 I am not an R user, so there can be issues with it.

At risk of removal from Bioconductor

Would that not be only be executed if `rbokeh` is installed?

At risk of removal from Bioconductor

`aux_createViewerApp.R` is removed now.

At risk of removal from Bioconductor

Another attempt. Version number is also updated to 1.26.0 (assuming this is the correct thing to do: https://code.bioconductor.org/browse/AUCell/commit/32bf58ee019f245e2fca448e5fa97fcd236a1fe4)

At risk of removal from Bioconductor

@lshep The `devel` branch now contains this commit and is based on the latest `devel` branch on https://code.bioconductor.org/browse/AUCell/ . I don't have access to the repo on bioconductor, so I...