Ghislain Vaillant
Ghislain Vaillant
I recently found out about [templateflow](https://www.templateflow.org/), which provides a consistent way to fetch and provide templates. It provides a Python client for fetching the template files locally or from a...
Whilst reviewing #587, it struck me that some parts of Clinica implement conversions from BIDS normalized IDs back to the source dataset IDs for subjects and sessions. It's probably not...
Use Poetry's support for [optional groups](https://python-poetry.org/docs/master/managing-dependencies/#optional-groups) to improve dependency management. The immediate benefit is avoiding redundant declaration of dependencies for Poetry and Conda to support installing only what's necessary to...
Some pipelines require additional resources (such as atlasses or mappings) which we do not want to bundle within Clinica for various reasons like size or licensing terms. Nonetheless, Clinica may...
Clinica implements its own wrapper around [SurfStat](https://math.mcgill.ca/keith/surfstat/), a MATLAB toolbox for statistical analysis of surface and volumetric data. MATLAB runtime management is a pain and `nipype` has been of great...
## Context This issue happens when converting collections with a reduced set of participants, for instance when doing triage on a bug for a specific participant. ## Description The converter...
This is a feature request related to the Clinica Cloud project. S3 is an object storage protocol used by most cloud service providers for blob storage. Since `clinica` relies heavily...
Following our [work](https://github.com/aramis-lab/clinica/pull/301) on migrating interactive prompts to Click, some shortcomings regarding the current user experience wrt to interactivity surfaced. Some pipelines provide the caller with the ability to set...
Running the `t1-freesurfer` pipeline on a BIDS dataset with participants for which selected sessions are missing a T1 scan, I am getting the following output: ```console % clinica run t1-freesurfer...
**Describe the bug** I get a summary of the subjects not found in the BIDS folder despite manually specifying a list of subjects via the `-sl / --subjects-list` option. If...