Hua Gao

icon indicating an email [email protected]

icon company Stanford University icon location Stanford, CA icon location 般若 (bō rě), Prajñā or paññā, is a Buddhist term often translated as "wisdom", "intelligence", or "understanding"

Results 5 comments of Hua Gao

lookup unmapped accession numbers through NCBI eutils

Hi, @thbtmntgn. I just checked the example accession number NZ_LS483329 in dead_nucl and dead_wgs, but did not find it there. I have no idea why this accession exists in NCBI...

lookup unmapped accession numbers through NCBI eutils

Thank you for your time. The following is my code, accepting **unmapped.txt** as input. ```perl #! /usr/bin/env perl use strict; use warnings; use XML::Simple; use LWP::Simple; use Data::Dumper; use constant...

wall of text when activating conda environment via conda directive

I tried to locate the source of this wall of "export" envvars message based on v8.1.0, and found, 1. this message occurs when spawning jobs [here](https://github.com/snakemake/snakemake/blob/6175ea380b92db0fa9956c3b9b57d6e911164b74/snakemake/executors/local.py#L184C18-L184C18) ```python def run_single_job(self, job:...

wall of text when activating conda environment via conda directive

Actually, it's related to [snakemake-interface-executor-plugins](https://github.com/snakemake/snakemake-interface-executor-plugins). Will create an issue linked here.

wall of text when activating conda environment via conda directive

@Hocnonsense is working on a fix and has submitted a [pull request](https://github.com/snakemake/snakemake-interface-executor-plugins/pull/57). While we wait for the code to be merged, there is a temporary workaround you can use by...