Gemma Fardell
Gemma Fardell
The gradient and adjoint implemented don't seem to have consistent boundary conditions and I think that makes the function non-linear [Direct](https://github.com/vais-ral/CCPi-Regularisation-Toolkit/blob/9074828d1e0876b41bdb40da8f622824e6614e94/src/Core/regularisers_CPU/FGP_TV_core.c#L198-L199) ``` if (i == dimX-1) val1 = 0.0f; else...
Tests fail on windows. ``` ====================================================================== ERROR: test_download_data_input_n (test_dataexample.TestRemoteData) Test the download_data function, when the user input is 'n' to 'are you sure you want to download data' ---------------------------------------------------------------------- Traceback...
Builds on anvil should be triggered by commits to pull requests. It seems this isn't being triggered if the commits are on a repository fork even if the PR target...
``` C:\Users\gemst\miniconda3\conda-bld\cil_1708540316940\test_tmp\Wrappers\Python\test\utils.py:130: ResourceWarning: unclosed file sys.stdout = sys.__stdout__ ResourceWarning: Enable tracemalloc to get the object allocation traceback ``` https://github.com/TomographicImaging/CIL/blob/7632209f0ed756ce4258782af4c2c531b34c1501/Wrappers/Python/test/utils.py#L125-L130 I guess we should close `os.devnull` if it exists. ```python def...
Readers could be standalone plugins `conda install -cil_reader_nikon -c ccpi -c conda-forge` This would mean that specific dependencies aren't required for the core CIL installation.
Trying to run v24.0.1 (installed from anaconda) via CIL I get an error: `Error: C:\Users\ofn77899\Dev\CCPi-Regularisation-Toolkit\src\Core\regularisers_GPU\TV_FGP_GPU_core.cu:408, code: 222, reason: the provided PTX was compiled with an unsupported toolchain.` This is on...
## Changes - When passed a `numpy.ndarray` `AcquisitionData` and `ImageData` now remove dimensions of 1 from the numpy meta data before passing to `DataContainer`. This matches `AcquisitionGeometry` and `ImageGeometry` -...
A change in the behaviour of our `ImageGeometry` class is causing issues with reconstruction geometries. Previously, the `shape` and `dimension_labels` including dimensions of length 1. However, this has been modified...
https://github.com/TomographicImaging/CIL/blob/3a164f1ff685d7e3689c123021361243511b66fd/Wrappers/Python/cil/recon/Reconstructor.py#L115-L116 Should be `ccpi::tigre` and `conda-forge::astra-toolbox` however the astra command is currently more cumbersome (see current install instructions)
## Describe your changes - Added a reader base class with new functionality - `metadata` and `geometry` as properties of the object - `get_raw_flatfield` - returns the flatfields as a...