gevro

Update: The error happened again with the latest Biostrings and R versions. It happened this time with a different chunk of the data. Fortunately it is happening with an even...

@hpages : Ok I have a minimal reproducible example, ~200 lines of code and an 845 Mb input file. Would you like me to share this with you? It is...

Thanks. Since I need to protect the input data (I couldn't make a reproducible version with dummy data), I can send you by e-mail.

Oh I meant I will send a dropbox link with the file.

Hi, I sent the dropbox link with script/files to reproduce the bug. Thanks!

Hi, I also e-mailed @hpages a docker that reproduces the bug. It seems like a memory overflow bug.

Hi, Just checking if someone from the developer team is able to reproduce and check this bug? Thank you!

Thanks - sent!

Hi all, I managed to reproduce the bug inside the docker, while running with valgrind. Looks like the bug might be at XStringSet_class.c:141, or at least that is the line...

Hi all, just bumping up this issue again. Since I've narrowed it down to a specific line I think in the biostrings C code. But feasibly only someone who wrote...