gevro

We will test in a few days

Is there a way to upgrade annotSV while keeping our custom annotations / configurations and also the genecards annotation?

Using the latest annotSV version, for some reason it is not finding variantconvert. Python 3.9 is giving an error that it couldn't find the variantconvert module.

Yes it does. I already deleted the log so I don't have the complete output. What I have done is I now went into this directory: $ANNOTSV/share/python3/variantconvert and then I...

The first time I ran it I had python 3.8. I think that explains the error. But then the next time I ran it, I had python 3.9 but it...

I think I will just uninstall variantconvert and delete the pipinstall.flag file and rerun and see if that works.

Ok that seems to have fixed the problem.

Hello, I'm curious if this has been implemented?

I think the issue is the code at this step is trying to write to a directory that is not accessible via the singularity container. I need to specify available...

Hello, Just checking if any idea how to fix this? The issue I think is sqlite trying to write to some temp directory that is not writable when running it...