gevro

Is it possible to connect offline via e-mail so I can explain better?

Of course, thank you so much!

Note also issue #666. I posted it without the full question by mistake before the comment was closed. I'm linking here in case you don't get notifications on closed comments.

I have a bit of a different situation than the usual one. My library structure provides sequence on both top and bottom strand in each individual flow cell cluster. And...

Thanks, but that approach won't work unfortunately. GroupReadsByUmi --strategy --> CallDuplexConsensusReads generates two duplex consensus sequences from A1+B2 and A2+B1. However, my library structure has inserts smaller than the read...

I'm running it simply like this: ProcessRepeats genome.fasta.cat.gz I'm not seeing any output. Just running ProcessRepeats shows that the tool is ok: ``` ProcessRepeats No cat file indicated NAME ProcessRepeats...

Hi, I am getting the exact same error. Did you figure out the cause?

Sorry, none of these work. I'm getting these errors: ``` > results(fds,sampleIDs = "Sample_RNA", aggregate = FALSE, all = TRUE) Sat Sep 16 16:06:31 2023: Collecting results for: psi3 Error:...

Since MUSIC2 still uses ExpressionSet as input, and ExpressionSet does not accept sparse dgCMatrix, is there any other way to run MUSIC2 with sparse matrices?

Hi, Has the bug in variantconvert been fixed yet?