geoffschieb

Yes, that's right: you need to calculate at what quantile the value stands in the lists of scores. Then supply the quantile parameter to the command. On Wed, Jun 5,...

Dear Sasi, Yes, it can be applied to ATAC data, but this is not yet built in. You will have to change the "cost function", which determines the cost matrix....

Dear Jo, Could you please elaborate on what you mean by "terminal cells at intermediate time-points"? What's the mathematical definition of this? I think you mean cells that are 100%...

Yes, I would call "have no progeny and will eventually die" a precise mathematical definition :-) Our method is specifically designed to handle this through the "growth rates". This parameter...

Hi Ivan, You can compute the descendant distribution of any cell by extracting a row of the coupling matrix (for two adjacent time points this is the transport map, for...

Hi Ivan, We've just released a tutorial on WOT: https://broadinstitute.github.io/wot/tutorial/ I'm sending this to anyone who has expressed interest recently. Best, Geoff On Thu, Mar 21, 2019 at 9:26 AM...