noctua
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geneontology
Graph-based modeling environment for biology, including prototype editor and services
In this model The phosphorylation status of rec8 is important (in this case ([Phos:(S450),UnPhos(S412)](https://purl.obolibrary.org/obo/PR_000050512)) In PRO this has a short label PRO-Short-label: EXACT: Spom-rec8/Phos:2 Because most of our models will...
- [ ] Send reminder email to go-consortium mailing list - [ ] Run noctua-models-migration pipeline for (@vanaukenk) (automated to day before) to get report http://skyhook.berkeleybop.org/noctua-models-migrations/reports/ - [ ] Refresh...
sometimes, I cannot import existing annotations, although I can see them, and select them, they do not appear in the activity unit? this is happening for me now on http://noctua.geneontology.org/workbench/noctua-visual-pathway-editor/?model_id=gomodel%3A662af8fa00000499...
During the testing of the MGI import to GOC project, I noticed one of our gene-centric models (Cntn2) failed to be exported into MGI from Noctua. Further looking into the...
I noticed that interactions of types "indirectly positively/negatively regulates" and "constitutively upstream of" are not rendered in the Alliance pathway preview.
I am loving using the new pathway editor, it is very easy to use. It would be very awesome if, when you created activity A, process B and input C,...
Links go to https://proconsortium.org/cgi-bin/pro/entry_pro?id=PR:000050512 should go to https://proconsortium.org/cgi-bin/entry_pro?id=PR_000050512
I suspect this is because I have no evidences on my inputs and outputs, but I don't understand why these need evidence, this is what the reaction does? (I only...
NOT terms are displayed but without the NOT qualifier, which is a bit confusing: Here, mRNA capping enzyme is a NOT
The 'Filter by Term' search on the landing page does not search over the 'regulates' relation, which can result in models being missed. So, searching with the term 'regulation of...
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Graph-based modeling environment for biology, including prototype editor and services