go-annotation
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geneontology
This repository hosts the tracker for issues pertaining to GO annotations.
* **PTHR ID & PTN node:** GO:0000422 [autophagy of mitochondrion](https://www.pombase.org/term/GO:0000422) [IBA](http://wiki.geneontology.org/index.php/Inferred_from_Biological_aspect_of_Ancestor_(IBA)) with [Q9Y3D6](https://www.uniprot.org/uniprot/Q9Y3D6) , [PTN000326738](http://www.pantherdb.org/panther/lookupId.jsp?id=PTN000326738) [GO_REF:0000033](https://www.pombase.org/reference/GO_REF:0000033) * **Sequences with problematic annotation (ID + gene/protein name):** https://www.pombase.org/gene/SPBC11G11.01 * **Type of Issue:...
* **PTHR ID & PTN node:** GO:0009113 purine nucleobase biosynthetic process IBA with PTN000797965 , S000001788 GO:0006164 purine nucleotide biosynthetic process IEA with KW-0658 this is the last step in...
See https://github.com/geneontology/go-ontology/issues/27182 id: GO:0004023 name: alcohol dehydrogenase activity, metal ion-independent namespace: molecular_function def: "Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+;...
These are all "mitochondrial membrane" in eukaryotes and "plasma membrane" in bacteria Rule: don't transfer compartments from bacteria/archaea to eukaryotes Atp5 F1-FO ATP synthase delta subunit IEA with PTHR11910:SF1 Dbr1...
https://www.pombase.org/gene/SPBC13G1.05 NOT GO:0045724 | positive regulation of cilium assembly | IEA with PTHR13317:SF4 | GO_REF:0000118 Note to self, add taxon restriction
Hi Looks like most/all Complex Portal annotations to complexes are getting a 'located_in' relation instead of 'part_of' relation in P2GO. E.g. see annotations for PMID:11713534 I mentioned this to Sandra...
Dear all, The proposal has been made to obsolete GO:0047844 deoxycytidine deaminase activity. see https://github.com/geneontology/go-ontology/issues/27410. Experimental annotations that need to be reviewed are here: https://docs.google.com/spreadsheets/d/1PO77zYKLP6nsPHPuag7bEeuF5t56VFfmTPFIAnGfQfc/edit#gid=0 Impacted groups: EcoCyc 1 GeneDB...
These each should have fewer than 10 manual annotations. GO:0033671 negative regulation of NAD+ kinase activity GO:1905688 negative regulation of diacylglycerol kinase activity GO:1903300 negative regulation of hexokinase activity GO:1904324...
Dear all, We are adding a new QC check that identifies annotations to retracted publications, and will filter these annotations. For information, annotations are here: https://docs.google.com/spreadsheets/d/1yZX504huEuCyvrzXdqV6zPl8vr-KZ2QVJL2b7k8RHpI/edit#gid=0 Group | number of...
* **PTHR ID & PTN node:** PTN008604283 UBIQUITIN-CONJUGATING ENZYME E2 (PTHR24068) * **Sequences with problematic annotation (ID + gene/protein name):** FBgn0026316 | Ubc10 FBgn0017456 | Ubc84D FBgn0011217 | eff FBgn0035584...
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This repository hosts the tracker for issues pertaining to GO annotations.