TreeGrafter issues, plasma membrane various PTHR11910:SF1/ PTHR19370:SF184/ PTHR43448:SF2/ PTHR11921:SF29 / PTHR10978:SF5 /PTHR48109:SF4 / PTHR43327:SF10 / PTHR11629:SF63

[ValWood]

These are all "mitochondrial membrane" in eukaryotes and "plasma membrane" in bacteria Rule: don't transfer compartments from bacteria/archaea to eukaryotes

Atp5 F1-FO ATP synthase delta subunit IEA with PTHR11910:SF1

Dbr1 NADH-dependent reductase for Dph3, Cbr1 IEA with PTHR19370:SF184

Cox10 protoheme IX farnesyltransferase IEA with PTHR43448:SF2

Sdh2 succinate dehydrogenase (ubiquinone) iron-sulfur protein subunit IEA with PTHR11921:SF29

Sdh3 succinate dehydrogenase (ubiquinone) cytochrome b subunit IEA with PTHR10978:SF5

Ura3 mitochondrial dihydroorotate dehydrogenase Ura3 IEA with PTHR48109:SF4

SPBC16G5.07c stomatin IEA with PTHR43327:SF10

[ValWood]

This one is vacuolar membrane in eukaryotes , plasma membrane in prokeryotes

Vph1 V-type ATPase V0 subunit a IEA with PTHR11629:SF63