Min Dai

> Ubuntu > Using Anaconda API: https://api.anaconda.org > Solving environment: failed > > ResolvePackageNotFound: > > * opencv3==3.0.0=py35_0 > * tbb==4.3_20141023=0 > > Though I've placed these two requirements under...

I have a similar need for calculating cosine similarities for two matrices. Thank you!

Hi @guerrerosimonl, Thank you for your interest in our work, could you please share the information of `sessionInfo()`, thank you! Best regards, Min

Hi @pcahan1, Thank you for your interest in COSG and pointing out this bug. I have pushed a commit in which I added the logfoldchanges to the result: ``` import...

@woshiyangsi Hi, thank you for your interest! I will fix this error soon, now you can try the following codes to visualize top marker genes identified by COSG in Scanpy...

Hi, The above error might be caused by using the SCT assay, which is not sparse after the scTransform normalization. We recommend use the `RNA` assay with the slot `data`...

Hi Gireesh @gireeshkbogu, I am also trying to call peaks for RNA-seq datasets using MACS2, could you please share me with the parameter settings? Really appreciated! Thank you! Best regards,...

Hi @guerrerosimonl, Really sorry for the late reply! Now the issue has been solved and you could solve the above issue by reinstalling COSG. Best, Min

Hi, Thank you for your interest! Sorry, I just saw your message, could you please try this example data (https://drive.google.com/file/d/1z-aqz08fCUJ9WmJBIPX0RIkLyEFXvirO/view?usp=share_link) and check whether the error still exists? You could also...

> Dear Min, > > Great work! Really fast! I met the sample problem when dealing with a seurat object. I think the error is caused by the extremely low...