WANG Gefei

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I got the same error when I was running process_data.py.

@stillbetter Thank you! I got this problem solved, and I can run avg_runner.py without normally after processing data.

@Allan-Xu I met the same problem, because I have installed another package also called "provider". Changing the filename of utils/provider.py works for me.

> Sorry for the late reply. If you check line 499 of DeepLearning/my_sngan.py, you may notice the method `eval_sampling` randomly generates image samples and save the generated images to a...

Hi Lilly, The command (`genes_shared = adata_st.var.index & adata_st_new.var.index`) selects genes that are measured in both single-cell spatial transcriptomics data. The error message `TypeError: unsupported operand type(s) for &: 'str'...

Hi Cristal, This is the correct dataset. Best, Gefei

> ![1710146107658](https://private-user-images.githubusercontent.com/47787078/311635884-0f7351d9-648e-4d58-bafe-f9f78798b186.jpg?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.U2-bJ11p00wBXwqwAKE3VKb9R6UNWISI6XUrAFhTKvA) Dear Professor,thanks for your explanation and patience! i went to http://spatial.libd.org/spatialLIBD/ download DLPFC dataset, but i dont find where to download this data "/data/spatialLIBD/barcode_level_layer_map.tsv", can you tell me...

Hi Cristal, To evaluate methods in R, we need to first create file types that can be read in R. There are several ways to do this. One way to...

Hi Cristal, For the cell-type proportion graphs you mentioned, we used pie plots for visualization. You can use [matplotlib.axes.Axes.pie](https://matplotlib.org/stable/api/_as_gen/matplotlib.axes.Axes.pie.html) in python, or some equivalent functions in R to plot it....