GAO Chengyuan

icon indicating a website link https://www.sustech.edu.cn/

icon company Southern University of Science and Technology icon location ShenZhen icon location Southern University of Science and Technology, major in Robotics Engineering.

Results 1 issues of GAO Chengyuan

extract "ANN[*].RANK" from the ANN field

Hi, I have a vcf file annotated by snpeff and want to extract "ANN[*].RANK" from the ANN field like ANN=G|missense_variant|MODERATE|TNN|ENSG00000120332|transcript|ENST00000239462|protein_coding|13/19|c.3038C>G|p.Thr1013Arg|3151/5008|3038/3900|1013/1299|| java -jar /home/pmi/src/snpEff/SnpSift.jar extractFields my.vcf CHROM POS ID REF ALT...