gchevignon

Results 12 comments of gchevignon

I was going through the human chromosome 21 & 22 example and am encountering what looks like a communications error with guppy

Hello, ReadBouncer release 1.2.2 did not fix the communication problem on my side ... I still have the same error. Thanks Germain

I was going through the human chromosome 21 & 22 example and am encountering what looks like a communications error with guppy

My Guppy is Version 6.2.11 the one that come with minknow ... I'll try to install Guppy 6.3 !

I was going through the human chromosome 21 & 22 example and am encountering what looks like a communications error with guppy

Ok so when I install Guppy 6.3.7 this remove the /lib/systemd/system/guppyd-cpu.service ... so the simulation run crash ... I have posted a comment at Nanopore community regarding this : https://community.nanoporetech.com/posts/guppy-v6-3-1-release...

I was going through the human chromosome 21 & 22 example and am encountering what looks like a communications error with guppy

Hi, (1) I have first installed Minknow for unbuntu 20 following this protocol : https://community.nanoporetech.com/docs/prepare/library_prep_protocols/experiment-companion-minknow/v/mke_1013_v1_revcl_11apr2016/installing-minknow-on-linu This come with guppy 6.2.11. (2) Then I have installed guppy-gpu for unbuntu 20 following...

I was going through the human chromosome 21 & 22 example and am encountering what looks like a communications error with guppy

Hi, Would you share the method you use to install guppy 6.3 along with Minknow please ? Best

I was going through the human chromosome 21 & 22 example and am encountering what looks like a communications error with guppy

I am really interested to know how you get guppy 6.3 working in live basecalling with minknow because this should be impossible to set-up according to this post answering my...

I was going through the human chromosome 21 & 22 example and am encountering what looks like a communications error with guppy

> Hi Mark > > I did install the Guppy GPU version provided via nanopore community -> software. I did not test Guppy 6.3 for live basecalling/adaptive sampling from within...

I was going through the human chromosome 21 & 22 example and am encountering what looks like a communications error with guppy

Thanks a lot Jens for your time ! Unfortunately I can't get it works .... I have use [ReadBouncer-1.2.2_guppy_6.2-Linux_x64.tar.gz](https://github.com/JensUweUlrich/ReadBouncer/releases/download/v1.2.2/ReadBouncer-1.2.2_guppy_6.2-Linux_x64.tar.gz) /home/userlocal/Downloads/ReadBouncer-1.2.2-Linux/bin/ReadBouncer --config /home/userlocal/Desktop/Scripts.dir/ReadBouncer.dir/config_target_test-V2.toml 965 bins were loaded in 0.0401222 seconds from...

I was going through the human chromosome 21 & 22 example and am encountering what looks like a communications error with guppy

Same error .... /home/userlocal/Downloads/ReadBouncer-1.2.2-Linux/bin/ReadBouncer --config /home/userlocal/Desktop/Scripts.dir/ReadBouncer.dir/config_target_test-V2.toml 965 bins were loaded in 0.0406771 seconds from the IBF 29596 bins were loaded in 1.19359 seconds from the IBF Trying to connect to...

I was going through the human chromosome 21 & 22 example and am encountering what looks like a communications error with guppy

Here is the error I get with the first command in the terminal: /opt/ont/guppy-gpu/ont-guppy-6.2.11/bin/guppy_basecall_server --log_path /var/log/guppy --config dna_r9.4.1_450bps_fast.cfg --num_callers 1 --cpu_threads_per_caller 2 --port 5556 --ipc_threads 3 -x cuda:all --use_tcp terminate...