Gabrielle Rafanan Cabebe

icon company Worcester Polytechnic Institute icon location PhD student in Bioinformatics & Computational Biology

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genomecov -d -pc -ibam showing no coverage for every position

Someone on StackExchanged answered my question [here](https://bioinformatics.stackexchange.com/questions/22176/bedtools-genomecov-gives-me-coverage-files-showing-zeros-at-all-nucleotide-posit): It was because I included the argument ```-pc```, which is only for paired-end reads. The second column on the bam file I showed...