George Bouras

Spots - way to get the flanking genes?

3

Hi, Thanks for creating PPanGGOLiN - I'm finding it to be a great way to see what is going on in the pangenome especially in terms of MGEs and prophages...

checkm.out strange 0 completeness and marker genes for large bins

10

Hi Rhys, I was successfully able to run aviary very easily on a test sample (it was much easier to install, lorikeet issue notwithstanding, and runs a lot smoother for...

citation

1

Hi Robert, I'm using fastq-dl to download a bunch of Fastqs for some benchmarking - it's so good! Question about citation - should I just refer to the GitHub? George

**Describe the bug** Hi, I installed socru using Conda v 2.2.4 and got this error when I tried it on an isolate Traceback (most recent call last): File "/Users/a1667917/mambaforge/envs/socru/bin/socru", line...

Database Download & Documentation

1

Gday @psj1997 @luispedro and other Semibin developers, Firstly thanks for Semibin(2) - it works amazingly well, so many bins recovered compared to other binning methods :) I want to share...

minor bug with conda install `import: command not found`

1

Hi developers, Thanks for the great tool - very fast and accurate! I installed clair3 via option 3 Bioconda. Linux system with GPU available Ubuntu 20.04 I ran Clair3 as...