gaoxiangcao
gaoxiangcao
i want to know if this software can run with cpu mode or could you give me some advice on running with cpu mode
Hi， everyone Due to the issue of preprocess by conda installtion, i try the pip to install tombo, however i encounter the error when i installed tombo. how can i...
Dear developer， Thanks for the powerful tools you developed！When i use this software in windows，i could not find a good way to export my modification spectra expediently. Could you give...
Dear developers, I am unsure why the maximum variable modification option is not working. Do you have any suggestions? I am also not getting any results when running the software....
Hi , I’m working with scBasset and wanted to ask how the ad_rna_annotate.h5ad file is generated. Could you briefly explain the main steps, including any preprocessing or annotations, and the...
Hi, “I encountered the following issue while performing molecular dynamics simulations with AMBER on a DNA sequence. What is the cause of this? FATAL: Atom .R.A does not have a...
Dear developers, I used the attached script (openmm_mds.py) to perform a molecular dynamics simulation, but I encountered an error in the log file. I have also attached my input files:...
Hi, I am currently facing an issue while running my simulation using OpenMM. The error traceback I received is as follows: Traceback (most recent call last): File "/media/autumn/gaoxiang/bioinformatics/mds/struc_prep_relax_openmm/openmm_mds.py", line 15,...
Hi, thanks for the great tool! Can I use the transcript-level counts from IsoQuant as input for DESeq2 for differential expression analysis? Thanks!
Hi, I’m using modkit pileup to analyze pseudouridine (Ψ) modifications in RNA. However, when I visualize the results in IGV, I see that many called modification sites are not located...