Félix Raimundo

icon indicating a website link gamazeps.github.io

icon location Paris icon location Applying ML to solve bio problems

Results 3 comments of Félix Raimundo

Bring back GTF attributes parser?

for what it's worth I have not had any issues with gtfparse on neither GENCODE or ENSEMBL. So we could just have a wrapper around gtfparse.read_gtf, and rename the`'seqname'` to...

Add UCSC TxDb

Still a massive WIP, will finish this Weekend (the bottleneck right now is finding which are the joins done to provide the tables in the R implementation)

Using patchelf `--add-needed` and `--remove-needed` breaks PIE executable

A colleague on NixOS could not reproduce this. I am using Ubuntu 16.04 LTS and `uname -a` gives the following output: `Linux terrier 4.4.0-59-generic #80-Ubuntu SMP Fri Jan 6 17:47:47...